The ion-exchange chromatography process allows the separation of ions and polar molecules based on the charge properties of the molecules. It can be used for almost any kind of charged molecule including large proteins, small nucleotides and amino acids, with the experimental solution to be separated collectively known as the analyte. It is often used as a first step in protein purification.
For proteins, this technique separates according to their net charge, as the constituent amino acids will have differing charges at various pH's. By adjusting the pH or the ionic concentration, various protein molecules can be separated by changing the the charge on the analyte or the stationary phase. For example, if a protein has a net positive charge at pH 7, then it will bind to a column of negatively-charged beads, whereas a negatively charged protein would not. By changing the pH so that the net charge on the protein is negative, it too will be eluted.
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