Inbreeding is breeding between close relatives, whether plant or animal. If practiced repeatedly, it often leads to a reduction in genetic diversity, and the accumulation of negative recessive traits, resulting in inbreeding depression. This may result in inbred individuals exibiting reduced health and fitness and lower levels of fertility.
Livestock breeders often practice inbreeding to "fix" desirable characteristics within a population. However, they must then cull unfit offspring, especially when trying to establish the new and desirable trait in their stock.
The reduced genetic diversity that results from inbreeding may mean a species may not be able to adapt to changes in environmental conditions. Where a species becomes endangered, the population may fall below a minimum whereby the forced interbreeding between the remaining animals will result in extinction.
It is possible for a population to become inbred without inhertiting deleterious traits. For instance the cheetah is a highly inbred species, resulting from a population bottleneck. Many island species are also highly inbred.
An example of mechanical means is the sweet cherry. It has an elaborate biochemical mechanism that precludes self-fertilization and combination of gametes of high genetic similarity. Fruit flies, on the other hand, have a sensing mechanism to do the same thing, and more genetic diversity than expected by random mating is observed even in a closed population.
The incest taboo in humans is a societal means to avoid inbreeding. Mating with close relatives is often forbidden, although the definition of "close relatives" varies - it can include immediate family (parents, siblings), extended family (cousins) or even exclude whole generations (anyone of your father/mother's generation).
Many pack or herd animals (such as lions, horses and dogs) practice a social method to reduce inbreeding: young males are expelled from the group before they reach sexual maturity and might become competition for the alpha male, the only one to have sexual rights within his group.
Inbreeding is used by breeders of domestic animals to fix desirable genetic traits within a population. This is often called line breeding within the livestock industry For instance an animal with a desirable colour is bred back to siblings or parents, on the understanding they may carry the genes for the colour without expressing them. Breeders must then cull unfit individuals, and when possible outbreed to unrelated stock to ensure deleterious traits are not also inherited.
Purebred animals are often inbred; some critics argue the practice is unhealthy. Many dog breeds have genetic diseases associated with their breed from this practice. *
Inbreeding is also deliberately induced in laboratory mice in order to guarantee a consistent and uniform animal model for experimental purposes. The problems with inbreeding are demonstrated by the fact that only about one in twenty inbred lines are sucessfully established.
Intermarriage in European royal families is no longer a problem, due to modern science and our understanding of the negative consequences, as well as the growing tendency to marry commoners. Also, it is not necessarily the case that there was a greater amount of inbreeding within royalty than there is in the population as a whole: it may simply be more well documented. Among genetic populations that are isolated, opportunities for exogamy are reduced. Isolation may be geographical, leading to inbreeding among peasants in remote mountain valleys. Or isolation may be social, induced by the lack of appropriate partners, such as Protestant princesses for Protestant royal heirs. Since the late middle ages, it is the urban middle class that has had the widest opportunity for outbreeding.
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